National Cancer Institute at the National Institutes of Health (www.cancer.gov)

CGCI Data Matrix

Version 1.1 (January 2015) Version History
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Disease Patient
Data
Gene
Expression
Copy
Number
miRNA Sequence Other
Burkitt's Lymphoma (BLGSP)
Burkitt's Lymphoma (BLGSP) Clinical
File

Case
Matrix

mRNA-seq

Whole
Genome




Whole
Genome
mRNA-seq

Targeted Re-
sequencing




Medulloblastoma (MB)
Medullo-
blastoma
(MB)
Clinical
File


Case
Matrix




Illumina
Infinium II 1M-Duo
DCC Controlled†











Targeted Re-
sequencing








Non-Hodgkin's Lymphoma (NHL)
Diffuse
Large B-Cell
Lymphoma
(NHL-DLBCL)
Clinical
File


Case
Matrix

mRNA-seq

FASTQ/BAM†
DCC Open*
DCC Controlled†

Whole
Genome
FASTQ/BAM†
DCC Controlled†





Whole
Genome
FASTQ/BAM†
DCC Controlled†

mRNA-seq

FASTQ/BAM†
DCC Open*
DCC Controlled†

Targeted Re-
sequencing




Follicular
Lymphoma
(NHL-FL)
Clinical
File


Case
Matrix

mRNA-seq

FASTQ/BAM†
DCC Open*
DCC Controlled†

Whole
Genome
FASTQ/BAM†
DCC Controlled†





Whole
Genome
FASTQ/BAM†
DCC Controlled†

mRNA-seq

FASTQ/BAM†
DCC Open*
DCC Controlled†

Targeted Re-
sequencing




HIV+ Tumor Molecular Characterization Project (HTMCP)
HIV+
Diffuse
Large B-Cell
Lymphoma
(HTMCP-
DLBCL)
Clinical
File

Case
Matrix

mRNA-seq

FASTQ/BAM†
Whole
Genome
FASTQ/BAM†
miRNA-seq

FASTQ/BAM†
Whole
Genome
FASTQ/BAM†
mRNA-seq

FASTQ/BAM†
Targeted Re-
sequencing




HIV+
Cervical
Cancers (HTMCP-CC)
Clinical
File

Case
Matrix

mRNA-seq

Whole
Genome




Whole
Genome
mRNA-seq

Targeted Re-
sequencing




HIV+
Lung Cancers (HTMCP-LC)
Clinical
File

Case
Matrix

mRNA-seq

FASTQ/BAM†
Whole
Genome
FASTQ/BAM†
miRNA-seq

FASTQ/BAM†
Whole
Genome
FASTQ/BAM†
mRNA-seq

FASTQ/BAM†
Targeted Re-
sequencing




CGCI Data Legend
Brown: Public*
Red: Protected†
Black: Unavailable
All DCC Controlled† access links require an NCI account
All FASTQ/BAM† are controlled access links and require an eRA Commons account